| BEAST1 | 1.8.4 | BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC |
| BAUti1 | 1.8.4 | A graphical user interface for creating input files to run BEAST |
| Genepattern | 1 | Link to GenePattern login page |
| IGV | - | IGV is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets |
| Cytoscape | 3.4.0 | Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data |
