Cytometry Workbench
Tools on the Cytometry Workbench
| Software | Version | Description |
|---|---|---|
| CellOntology | 1 | Link to CellOntology login page |
| CellProfiler | 2.2.0 | Cell Profiler is a cell image analysis software |
| CellProfiler Analyst | 2.2.0 | CellProfiler Analyst (CPA) allows interactive exploration and analysis of data, particularly from high-throughput, image-based experiments |
| Cytoscape | 3.4.0 | Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data |
| FCSalyzer | 0.9.12 | FCSalyzer is a free program for analysing flow cytometry data |
| Fiji | 20170528 | Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis |
| GenePattern | 1 | Link to GenePattern login page |
| GIMP | 2.8 | GIMP is the GNU image manipulation program |
| Huygens Software | 16.10.1-p1 | Huygens Software refers to different image processing packages, available for multiple platforms |
| ilastik | 1.2.0 | ilastik is a simple, user-friendly tool for interactive image classification, segmentation and analysis |
| ImageScope | 11.2.0.780 | ImageScope viewing software |
| NIS-Elements Viewer | 4.2.0 | NIS-Elements Viewer is a free standalone program to view image files and datasets |
| RStudio | 1.0.44 | RStudio is a set of integrated tools designed to help you be more productive with R |