Cytometry Workbench

Tools on the Cytometry Workbench

CellOntology 1 Link to CellOntology login page
CellProfiler 2.2.0 Cell Profiler is a cell image analysis software
CellProfiler Analyst 2.2.0 CellProfiler Analyst (CPA) allows interactive exploration and analysis of data, particularly from high-throughput, image-based experiments
Cytoscape 3.4.0 Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data
FCSalyzer 0.9.12 FCSalyzer is a free program for analysing flow cytometry data
Fiji 20170528 Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis
GenePattern 1 Link to GenePattern login page
GIMP 2.8 GIMP is the GNU image manipulation program
Huygens Software 16.10.1-p1 Huygens Software refers to different image processing packages, available for multiple platforms
ilastik 1.2.0 ilastik is a simple, user-friendly tool for interactive image classification, segmentation and analysis
ImageScope ImageScope viewing software
NIS-Elements Viewer 4.2.0 NIS-Elements Viewer is a free standalone program to view image files and datasets
RStudio1.0.44RStudio is a set of integrated tools designed to help you be more productive with R