| 3D Slicer | 4.6.0 | Slicer4, 3D cross-platform medical image processing and visualization |
| AFNI | 17.0.11 | AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. It runs on Unix+X11+Motif systems, including SGI, Solaris, Linux, and Mac OS X |
| Analyze | 12 | Volume Rendering, Virtual Endoscopy, Segmentation, Image Fusion, Surface Rendering, ROI measurement and many other imaging functions |
| FreeSurfer | 5.3 | Analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies |
| FSL | 5.0.9 | FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data |
| MRIcroGL | 1.0.20170207 | MRIcroGL allows you to view 2D slices and renderings of your brain imaging data |
| MRtrix | 0.3.15-gcc5 | MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines |
| SPM12 | MATLAB2015b.r6685 | The SPM software package has been designed for the analysis of brain imaging data sequences |
| SPM8 | MATLAB2015b.r6685 | The SPM software package has been designed for the analysis of brain imaging data sequences |
| XNAT desktop | 0.96 | A GUI for organizing local files of arbitrary content, storing text metadata with managed files, distributed sharing of structured research data and measurements among desktop users, file repository servers and XNAT Enterprise archives |
