| CCP4 | 7 | Collaborative Computational Project No. 4 software for Macromolecular X-Ray Crystallography |
| CryoSPARC | 0.41 | CryoSPARC is a software package for processing single-particle electron cryo-microscopy (cryo-EM) data |
| EMAN | 2.12 | EMAN2 is the successor to EMAN1. It is a broadly based grayscale scientific image processing suite with a primary focus on processing data from transmission electron microscopes |
| iMosflm | 7.2.1 | iMosflm can process diffraction images from a wide range of detectors and produces, as output, an MTZ file of reflection indices with their intensities and standard deviations (and other parameters) |
| Scipion | Devel, 1.1, 1.0.1 | Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy |
| UCSF Chimera | 1.11 | Chimera is an Extensible Molecular Modeling System |
