| CCP4 | 7 | Collaborative Computational Project No. 4 software for Macromolecular X-Ray Crystallography |
| CryoSPARC | 0.41 | CryoSPARC is a software package for processing single-particle electron cryo-microscopy (cryo-EM) data |
| EMAN | 2.12 | EMAN2 is the successor to EMAN1. It is a broadly based grayscale scientific image processing suite with a primary focus on processing data from transmission electron microscopes |
| iMosflm | 7.2.1 | iMosflm can process diffraction images from a wide range of detectors and produces, as output, an MTZ file of reflection indices with their intensities and standard deviations (and other parameters) |
| MATLAB | R2015b, R2016a | MATLAB (matrix laboratory) is a numerical computing environment and fourth-generation programming language |
| Relion | 1.4 | Relion is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy |
| Scipion | Devel, 1.1, 1.0.1 | Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy |
